Port of Aalborg has public customs warehouses in several locations at the port where goods in transit can be held and stored without paying customs duties or other taxes. 

For instance, there is a customs warehouse for imported containers at the container terminal. Its location optimises container handling because containers can be taken directly from the ship to the customs warehouse at the container terminal. A customs warehouse for palleted cargo has also been established at a warehouse at the port of Aalborg, making holding much more efficient.